Build Logs

1##################################

2Clonning https://github.com/phenoscape/scowl.git into /build/repo using revision v1.4.1

3##################################

4Note: switching to '1287db45015f67f4886465d03ad8caea3814701a'.

6You are in 'detached HEAD' state. You can look around, make experimental

7changes and commit them, and you can discard any commits you make in this

8state without impacting any branches by switching back to a branch.

10If you want to create a new branch to retain commits you create, you may

11do so (now or later) by using -c with the switch command. Example:

13 git switch -c <new-branch-name>

15Or undo this operation with:

17 git switch -

19Turn off this advice by setting config variable advice.detachedHead to false

21Using target Scala version for migration: 3.7.4

22Migrating project for -source:3.4 using Scala 3.7.4

23----

24Preparing build for 3.7.4

25Would try to apply common scalacOption (best-effort, sbt/mill only):

26Append: -rewrite,REQUIRE:-source:3.4-migration

27Remove: -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

28----

29Starting build for 3.7.4

30Execute tests: false

31sbt project found:

32Sbt version 1.6.2 is not supported, minimal supported version is 1.11.5

33Enforcing usage of sbt in version 1.11.5

34No prepare script found for project phenoscape/scowl

35##################################

36Scala version: 3.7.4

37Targets: org.phenoscape%scowl org.phenoscape%scowl-owlapi5

38Project projectConfig: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

39##################################

40Using extra scalacOptions: -rewrite,REQUIRE:-source:3.4-migration

41Filtering out scalacOptions: -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

42[sbt_options] declare -a sbt_options=()

43[process_args] java_version = '17'

44[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

45# Executing command line:

46java

47-Dfile.encoding=UTF-8

48-Dcommunitybuild.scala=3.7.4

49-Dcommunitybuild.project.dependencies.add=

50-Xmx7G

51-Xms4G

52-Xss8M

53-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

54-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

55-jar

56/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

57"setCrossScalaVersions 3.7.4"

58"++3.7.4 -v"

59"mapScalacOptions "-rewrite,REQUIRE:-source:3.4-migration,-Wconf:msg=can be rewritten automatically under:s" "-indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

60"set every credentials := Nil"

61"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

62"removeScalacOptionsStartingWith -P:wartremover"

64moduleMappings

65"runBuild 3.7.4 """{"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}""" org.phenoscape%scowl org.phenoscape%scowl-owlapi5"

67[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

68[info] loading settings for project repo-build from akka.sbt, plugins.sbt...

69[info] loading project definition from /build/repo/project

70[info] compiling 2 Scala sources to /build/repo/project/target/scala-2.12/sbt-1.0/classes ...

71[info] Non-compiled module 'compiler-bridge_2.12' for Scala 2.12.20. Compiling...

72[info] Compilation completed in 8.662s.

73[info] done compiling

74[info] loading settings for project parentProject from build.sbt...

75[info] set current project to scowl-project (in build file:/build/repo/)

76Execute setCrossScalaVersions: 3.7.4

77OpenCB::Changing crossVersion 3.0.2 -> 3.7.4 in owlapi4/crossScalaVersions

78OpenCB::Changing crossVersion 3.0.2 -> 3.7.4 in parentProject/crossScalaVersions

79OpenCB::Changing crossVersion 3.0.2 -> 3.7.4 in owlapi5/crossScalaVersions

80[info] set current project to scowl-project (in build file:/build/repo/)

81[info] Setting Scala version to 3.7.4 on 3 projects.

82[info] Switching Scala version on:

83[info] * parentProject (2.13.8, 3.7.4)

84[info] owlapi4 (2.13.8, 3.7.4)

85[info] owlapi5 (2.13.8, 3.7.4)

86[info] Excluding projects:

87[info] Reapplying settings...

88[info] set current project to scowl-project (in build file:/build/repo/)

89Execute mapScalacOptions: -rewrite,REQUIRE:-source:3.4-migration,-Wconf:msg=can be rewritten automatically under:s -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

90[info] Reapplying settings...

91[info] set current project to scowl-project (in build file:/build/repo/)

92[info] Defining Global / credentials, credentials and 1 others.

93[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

94[info] Run `last` for details.

95[info] Reapplying settings...

96[info] set current project to scowl-project (in build file:/build/repo/)

97Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

98[info] Reapplying settings...

99OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

101 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:331)

102 Did you mean owlapi5 / allExcludeDependencies ?

103 , retry without global scopes

104[info] Reapplying settings...

105[info] set current project to scowl-project (in build file:/build/repo/)

106Execute removeScalacOptionsStartingWith: -P:wartremover

107[info] Reapplying settings...

108[info] set current project to scowl-project (in build file:/build/repo/)

109[success] Total time: 0 s, completed Nov 28, 2025, 12:18:25 PM

110Build config: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

111Parsed config: Success(ProjectBuildConfig(ProjectsConfig(List(),Map()),CompileOnly,List()))

112Starting build...

113Projects: Set(owlapi4, owlapi5)

114Starting build for ProjectRef(file:/build/repo/,owlapi4) (scowl)... [0/2]

115OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

116OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

117Compile scalacOptions: -unchecked, -encoding, utf8, -rewrite, -Wconf:msg=can be rewritten automatically under:s, -source:3.4-migration

118[info] compiling 24 Scala sources to /build/repo/owlapi4/target/scala-3.7.4/classes ...

119[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/package.scala]

120[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/example/OWL2PrimerManchester.scala]

121[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/IndividualAxioms.scala]

122[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/ClassAxioms.scala]

123[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/DataExpressions.scala]

124[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/example/ReadMeExamples.scala]

125[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/omn/ScowlPropertyChain.scala]

126[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/SWRL.scala]

127[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/ObjectExpressions.scala]

128[info] done compiling

129[info] compiling 4 Scala sources to /build/repo/owlapi4/target/scala-3.7.4/test-classes ...

130[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowl/example/AnatomyOntology.scala]

131[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowltest/ScowlTest.scala]

132[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowl/example/DataChecks.scala]

133[info] done compiling

134Starting build for ProjectRef(file:/build/repo/,owlapi5) (scowl-owlapi5)... [1/2]

135Compile scalacOptions: -unchecked, -encoding, utf8, -rewrite, -Wconf:msg=can be rewritten automatically under:s, -source:3.4-migration

136[info] compiling 24 Scala sources to /build/repo/owlapi5/target/scala-3.7.4/classes ...

137[info] done compiling

138[info] compiling 4 Scala sources to /build/repo/owlapi5/target/scala-3.7.4/test-classes ...

139[info] done compiling

141************************

142Build summary:

143[{

144 "module": "scowl",

145 "compile": {"status": "ok", "tookMs": 10728, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

146 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

147 "test-compile": {"status": "ok", "tookMs": 5564, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

148 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

149 "publish": {"status": "skipped", "tookMs": 0},

150 "metadata": {

151 "crossScalaVersions": ["2.13.8", "3.0.2"]

152}

153},{

154 "module": "scowl-owlapi5",

155 "compile": {"status": "ok", "tookMs": 3144, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

156 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

157 "test-compile": {"status": "ok", "tookMs": 2526, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

158 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

159 "publish": {"status": "skipped", "tookMs": 0},

160 "metadata": {

161 "crossScalaVersions": ["2.13.8", "3.0.2"]

162}

163}]

164************************

165[success] Total time: 75 s (0:01:15.0), completed Nov 28, 2025, 12:19:40 PM

166[0JChecking patch project/plugins.sbt...

167Checking patch project/build.properties...

168Checking patch build.sbt...

169Applied patch project/plugins.sbt cleanly.

170Applied patch project/build.properties cleanly.

171Applied patch build.sbt cleanly.

172Commit migration rewrites

173Switched to a new branch 'opencb/migrate-source-3.4'

174[opencb/migrate-source-3.4 cfc6cb0] Apply Scala compiler rewrites using -source:3.4-migration using Scala 3.7.4

175 12 files changed, 130 insertions(+), 130 deletions(-)

176----

177Preparing build for 3.8.0-RC2

178Scala binary version found: 3.8

179Implicitly using source version 3.8

180Scala binary version found: 3.8

181Implicitly using source version 3.8

182Would try to apply common scalacOption (best-effort, sbt/mill only):

183Append: ,REQUIRE:-source:3.8

184Remove: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

185----

186Starting build for 3.8.0-RC2

187Execute tests: true

188sbt project found:

189Sbt version 1.6.2 is not supported, minimal supported version is 1.11.5

190Enforcing usage of sbt in version 1.11.5

191No prepare script found for project phenoscape/scowl

192##################################

193Scala version: 3.8.0-RC2

194Targets: org.phenoscape%scowl org.phenoscape%scowl-owlapi5

195Project projectConfig: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"full","migrationVersions":["3.4"],"sourcePatches":[]}

196##################################

197Using extra scalacOptions: ,REQUIRE:-source:3.8

198Filtering out scalacOptions: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

199[sbt_options] declare -a sbt_options=()

200[process_args] java_version = '17'

201[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

202# Executing command line:

203java

204-Dfile.encoding=UTF-8

205-Dcommunitybuild.scala=3.8.0-RC2

206-Dcommunitybuild.project.dependencies.add=

207-Xmx7G

208-Xms4G

209-Xss8M

210-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

211-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

212-jar

213/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

214"setCrossScalaVersions 3.8.0-RC2"

215"++3.8.0-RC2 -v"

216"mapScalacOptions ",REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s" ",-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

217"set every credentials := Nil"

218"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

219"removeScalacOptionsStartingWith -P:wartremover"

221moduleMappings

222"runBuild 3.8.0-RC2 """{"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"full","migrationVersions":["3.4"],"sourcePatches":[]}""" org.phenoscape%scowl org.phenoscape%scowl-owlapi5"

224[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

225[info] loading settings for project repo-build from akka.sbt, plugins.sbt...

226[info] loading project definition from /build/repo/project

227[info] loading settings for project parentProject from build.sbt...

228[info] set current project to scowl-project (in build file:/build/repo/)

229Execute setCrossScalaVersions: 3.8.0-RC2

230OpenCB::Changing crossVersion 3.0.2 -> 3.8.0-RC2 in owlapi4/crossScalaVersions

231OpenCB::Changing crossVersion 3.0.2 -> 3.8.0-RC2 in owlapi5/crossScalaVersions

232OpenCB::Changing crossVersion 3.0.2 -> 3.8.0-RC2 in parentProject/crossScalaVersions

233[info] set current project to scowl-project (in build file:/build/repo/)

234[info] Setting Scala version to 3.8.0-RC2 on 3 projects.

235[info] Switching Scala version on:

236[info] * parentProject (2.13.8, 3.8.0-RC2)

237[info] owlapi4 (2.13.8, 3.8.0-RC2)

238[info] owlapi5 (2.13.8, 3.8.0-RC2)

239[info] Excluding projects:

240[info] Reapplying settings...

241[info] set current project to scowl-project (in build file:/build/repo/)

242Execute mapScalacOptions: ,REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

243[info] Reapplying settings...

244[info] set current project to scowl-project (in build file:/build/repo/)

245[info] Defining Global / credentials, credentials and 1 others.

246[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

247[info] Run `last` for details.

248[info] Reapplying settings...

249[info] set current project to scowl-project (in build file:/build/repo/)

250Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

251[info] Reapplying settings...

252OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

254 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:331)

255 Did you mean owlapi5 / allExcludeDependencies ?

256 , retry without global scopes

257[info] Reapplying settings...

258[info] set current project to scowl-project (in build file:/build/repo/)

259Execute removeScalacOptionsStartingWith: -P:wartremover

260[info] Reapplying settings...

261[info] set current project to scowl-project (in build file:/build/repo/)

262[success] Total time: 0 s, completed Nov 28, 2025, 12:19:49 PM

263Build config: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"full","migrationVersions":["3.4"],"sourcePatches":[]}

264Parsed config: Success(ProjectBuildConfig(ProjectsConfig(List(),Map()),Full,List()))

265Starting build...

266Projects: Set(owlapi4, owlapi5)

267Starting build for ProjectRef(file:/build/repo/,owlapi4) (scowl)... [0/2]

268OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

269OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

270Compile scalacOptions: -unchecked, -encoding, utf8, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

271[info] compiling 24 Scala sources to /build/repo/owlapi4/target/scala-3.8.0-RC2/classes ...

272[info] done compiling

273[info] compiling 4 Scala sources to /build/repo/owlapi4/target/scala-3.8.0-RC2/test-classes ...

276[info] done compiling

278SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".

279SLF4J: Defaulting to no-operation (NOP) logger implementation

280SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.

281[info] ScowlTest:

282[info] Scowl class expressions

283[info] - should equal standard API

284[info] Scowl axioms

285[info] - should equal standard API

286[info] Scowl property chains

287[info] - should equal standard API

288[info] Scowl data properties and literals

289[info] - should equal standard API

290[info] Extractors

291[info] - should extract the right things

292[info] SWRL syntax

293[info] - should equal standard API

294[info] DataChecks:

295[info] rdfs:label values

296[info] - should be used only once per ontology !!! IGNORED !!!

297[info] hasExactSynonym values

298[info] - should be used only once per ontology !!! IGNORED !!!

299[info] No class

300[info] - should have a synonym that matches the label !!! IGNORED !!!

301[info] Annotation values

302[info] - should not contain double spaces !!! IGNORED !!!

303[info] Trim

304[info] - should not have an effect on annotation values !!! IGNORED !!!

305Starting build for ProjectRef(file:/build/repo/,owlapi5) (scowl-owlapi5)... [1/2]

306Compile scalacOptions: -unchecked, -encoding, utf8, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

307[info] compiling 24 Scala sources to /build/repo/owlapi5/target/scala-3.8.0-RC2/classes ...

308[info] done compiling

309[info] compiling 4 Scala sources to /build/repo/owlapi5/target/scala-3.8.0-RC2/test-classes ...

312[info] done compiling

314SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".

315SLF4J: Defaulting to no-operation (NOP) logger implementation

316SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.

317[info] ScowlTest:

318[info] Scowl class expressions

319[info] - should equal standard API

320[info] Scowl axioms

321[info] - should equal standard API

322[info] Scowl property chains

323[info] - should equal standard API

324[info] Scowl data properties and literals

325[info] - should equal standard API

326[info] Extractors

327[info] - should extract the right things

328[info] SWRL syntax

329[info] - should equal standard API

330[info] DataChecks:

331[info] rdfs:label values

332[info] - should be used only once per ontology !!! IGNORED !!!

333[info] hasExactSynonym values

334[info] - should be used only once per ontology !!! IGNORED !!!

335[info] No class

336[info] - should have a synonym that matches the label !!! IGNORED !!!

337[info] Annotation values

338[info] - should not contain double spaces !!! IGNORED !!!

339[info] Trim

340[info] - should not have an effect on annotation values !!! IGNORED !!!

342************************

343Build summary:

344[{

345 "module": "scowl",

346 "compile": {"status": "ok", "tookMs": 12290, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

347 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

348 "test-compile": {"status": "ok", "tookMs": 5169, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

349 "test": {"status": "ok", "tookMs": 12801, "passed": 6, "failed": 0, "ignored": 5, "skipped": 0, "total": 11, "byFramework": [{"framework": "unknown", "stats": {"passed": 6, "failed": 0, "ignored": 5, "skipped": 0, "total": 11}}]},

350 "publish": {"status": "skipped", "tookMs": 0},

351 "metadata": {

352 "crossScalaVersions": ["2.13.8", "3.0.2"]

353}

354},{

355 "module": "scowl-owlapi5",

356 "compile": {"status": "ok", "tookMs": 3471, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

357 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

358 "test-compile": {"status": "ok", "tookMs": 3430, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

359 "test": {"status": "ok", "tookMs": 13307, "passed": 6, "failed": 0, "ignored": 5, "skipped": 0, "total": 11, "byFramework": [{"framework": "unknown", "stats": {"passed": 6, "failed": 0, "ignored": 5, "skipped": 0, "total": 11}}]},

360 "publish": {"status": "skipped", "tookMs": 0},

361 "metadata": {

362 "crossScalaVersions": ["2.13.8", "3.0.2"]

363}

364}]

365************************

366[success] Total time: 59 s, completed Nov 28, 2025, 12:20:48 PM

367[0JChecking patch project/plugins.sbt...

368Checking patch project/build.properties...

369Checking patch build.sbt...

370Applied patch project/plugins.sbt cleanly.

371Applied patch project/build.properties cleanly.

372Applied patch build.sbt cleanly.