Build Logs

1##################################

2Clonning https://github.com/phenoscape/scowl.git into /build/repo using revision v1.4.1

3##################################

4Note: switching to '1287db45015f67f4886465d03ad8caea3814701a'.

6You are in 'detached HEAD' state. You can look around, make experimental

7changes and commit them, and you can discard any commits you make in this

8state without impacting any branches by switching back to a branch.

10If you want to create a new branch to retain commits you create, you may

11do so (now or later) by using -c with the switch command. Example:

13 git switch -c <new-branch-name>

15Or undo this operation with:

17 git switch -

19Turn off this advice by setting config variable advice.detachedHead to false

21Using target Scala version for migration: 3.7.4-RC2

22Migrating project for -source:3.4 using Scala 3.7.4-RC2

23----

24Preparing build for 3.7.4-RC2

25Would try to apply common scalacOption (best-effort, sbt/mill only):

26Append: -rewrite,REQUIRE:-source:3.4-migration

27Remove: -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

28----

29Starting build for 3.7.4-RC2

30Execute tests: false

31sbt project found:

32Sbt version 1.6.2 is not supported, minimal supported version is 1.11.5

33Enforcing usage of sbt in version 1.11.5

34No prepare script found for project phenoscape/scowl

35/opencb/project-builder/sbt/prepare-project.sh: line 107: /root/.ssh/config: No such file or directory

36##################################

37Scala version: 3.7.4-RC2

38Targets: org.phenoscape%scowl org.phenoscape%scowl-owlapi5

39Project projectConfig: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

40##################################

41Using extra scalacOptions: -rewrite,REQUIRE:-source:3.4-migration

42Filtering out scalacOptions: -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

43[sbt_options] declare -a sbt_options=()

44[process_args] java_version = '17'

45[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

46# Executing command line:

47java

48-Dfile.encoding=UTF-8

49-Dcommunitybuild.scala=3.7.4-RC2

50-Dcommunitybuild.project.dependencies.add=

51-Xmx7G

52-Xms4G

53-Xss8M

54-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

55-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

56-jar

57/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

58"setCrossScalaVersions 3.7.4-RC2"

59"++3.7.4-RC2 -v"

60"mapScalacOptions "-rewrite,REQUIRE:-source:3.4-migration,-Wconf:msg=can be rewritten automatically under:s" "-indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

61"set every credentials := Nil"

62"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

63"removeScalacOptionsStartingWith -P:wartremover"

65moduleMappings

66"runBuild 3.7.4-RC2 """{"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}""" org.phenoscape%scowl org.phenoscape%scowl-owlapi5"

68[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

69[info] loading settings for project repo-build from akka.sbt, plugins.sbt...

70[info] loading project definition from /build/repo/project

71[info] compiling 2 Scala sources to /build/repo/project/target/scala-2.12/sbt-1.0/classes ...

72[info] Non-compiled module 'compiler-bridge_2.12' for Scala 2.12.20. Compiling...

73[info] Compilation completed in 8.426s.

74[info] done compiling

75[info] loading settings for project parentProject from build.sbt...

76[info] set current project to scowl-project (in build file:/build/repo/)

77Execute setCrossScalaVersions: 3.7.4-RC2

78OpenCB::Changing crossVersion 3.0.2 -> 3.7.4-RC2 in owlapi4/crossScalaVersions

79OpenCB::Changing crossVersion 3.0.2 -> 3.7.4-RC2 in owlapi5/crossScalaVersions

80OpenCB::Changing crossVersion 3.0.2 -> 3.7.4-RC2 in parentProject/crossScalaVersions

81[info] set current project to scowl-project (in build file:/build/repo/)

82[info] Setting Scala version to 3.7.4-RC2 on 3 projects.

83[info] Switching Scala version on:

84[info] * parentProject (2.13.8, 3.7.4-RC2)

85[info] owlapi4 (2.13.8, 3.7.4-RC2)

86[info] owlapi5 (2.13.8, 3.7.4-RC2)

87[info] Excluding projects:

88[info] Reapplying settings...

89[info] set current project to scowl-project (in build file:/build/repo/)

90Execute mapScalacOptions: -rewrite,REQUIRE:-source:3.4-migration,-Wconf:msg=can be rewritten automatically under:s -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

91[info] Reapplying settings...

92[info] set current project to scowl-project (in build file:/build/repo/)

93[info] Defining Global / credentials, credentials and 1 others.

94[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

95[info] Run `last` for details.

96[info] Reapplying settings...

97[info] set current project to scowl-project (in build file:/build/repo/)

98Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

99[info] Reapplying settings...

100OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

102 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:336)

103 Did you mean owlapi5 / allExcludeDependencies ?

104 , retry without global scopes

105[info] Reapplying settings...

106[info] set current project to scowl-project (in build file:/build/repo/)

107Execute removeScalacOptionsStartingWith: -P:wartremover

108[info] Reapplying settings...

109[info] set current project to scowl-project (in build file:/build/repo/)

110[success] Total time: 0 s, completed Nov 15, 2025, 1:58:24 AM

111Build config: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

112Parsed config: Success(ProjectBuildConfig(ProjectsConfig(List(),Map()),CompileOnly,List()))

113Starting build...

114Projects: Set(owlapi4, owlapi5)

115Starting build for ProjectRef(file:/build/repo/,owlapi4) (scowl)... [0/2]

116OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

117OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

118Compile scalacOptions: -unchecked, -encoding, utf8, -rewrite, -Wconf:msg=can be rewritten automatically under:s, -source:3.4-migration

119[info] compiling 24 Scala sources to /build/repo/owlapi4/target/scala-3.7.4-RC2/classes ...

120[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/omn/ScowlPropertyChain.scala]

121[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/example/OWL2PrimerManchester.scala]

122[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/example/ReadMeExamples.scala]

123[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/ObjectExpressions.scala]

124[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/IndividualAxioms.scala]

125[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/SWRL.scala]

126[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/DataExpressions.scala]

127[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/ClassAxioms.scala]

128[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/package.scala]

129[info] done compiling

130[info] compiling 4 Scala sources to /build/repo/owlapi4/target/scala-3.7.4-RC2/test-classes ...

131[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowl/example/DataChecks.scala]

132[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowltest/ScowlTest.scala]

133[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowl/example/AnatomyOntology.scala]

134[info] done compiling

135Starting build for ProjectRef(file:/build/repo/,owlapi5) (scowl-owlapi5)... [1/2]

136Compile scalacOptions: -unchecked, -encoding, utf8, -rewrite, -Wconf:msg=can be rewritten automatically under:s, -source:3.4-migration

137[info] compiling 24 Scala sources to /build/repo/owlapi5/target/scala-3.7.4-RC2/classes ...

138[info] done compiling

139[info] compiling 4 Scala sources to /build/repo/owlapi5/target/scala-3.7.4-RC2/test-classes ...

140[info] done compiling

142************************

143Build summary:

144[{

145 "module": "scowl",

146 "compile": {"status": "ok", "tookMs": 10152, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

147 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

148 "test-compile": {"status": "ok", "tookMs": 5329, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

149 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

150 "publish": {"status": "skipped", "tookMs": 0},

151 "metadata": {

152 "crossScalaVersions": ["2.13.8", "3.0.2"]

153}

154},{

155 "module": "scowl-owlapi5",

156 "compile": {"status": "ok", "tookMs": 3223, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

157 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

158 "test-compile": {"status": "ok", "tookMs": 2420, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

159 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

160 "publish": {"status": "skipped", "tookMs": 0},

161 "metadata": {

162 "crossScalaVersions": ["2.13.8", "3.0.2"]

163}

164}]

165************************

166[success] Total time: 72 s (0:01:12.0), completed Nov 15, 2025, 1:59:37 AM

167[0JChecking patch project/plugins.sbt...

168Checking patch project/build.properties...

169Checking patch build.sbt...

170Applied patch project/plugins.sbt cleanly.

171Applied patch project/build.properties cleanly.

172Applied patch build.sbt cleanly.

173Commit migration rewrites

174Switched to a new branch 'opencb/migrate-source-3.4'

175[opencb/migrate-source-3.4 67d6cc6] Apply Scala compiler rewrites using -source:3.4-migration using Scala 3.7.4-RC2

176 12 files changed, 130 insertions(+), 130 deletions(-)

177----

178Preparing build for 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY

179Scala binary version found: 3.8

180Implicitly using source version 3.8

181Scala binary version found: 3.8

182Implicitly using source version 3.8

183Would try to apply common scalacOption (best-effort, sbt/mill only):

184Append: ,REQUIRE:-source:3.8

185Remove: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

186----

187Starting build for 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY

188Execute tests: false

189sbt project found:

190Sbt version 1.6.2 is not supported, minimal supported version is 1.11.5

191Enforcing usage of sbt in version 1.11.5

192No prepare script found for project phenoscape/scowl

193/opencb/project-builder/sbt/prepare-project.sh: line 107: /root/.ssh/config: No such file or directory

194##################################

195Scala version: 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY

196Targets: org.phenoscape%scowl org.phenoscape%scowl-owlapi5

197Project projectConfig: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

198##################################

199Using extra scalacOptions: ,REQUIRE:-source:3.8

200Filtering out scalacOptions: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

201[sbt_options] declare -a sbt_options=()

202[process_args] java_version = '17'

203[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

204# Executing command line:

205java

206-Dfile.encoding=UTF-8

207-Dcommunitybuild.scala=3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY

208-Dcommunitybuild.project.dependencies.add=

209-Xmx7G

210-Xms4G

211-Xss8M

212-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

213-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

214-jar

215/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

216"setCrossScalaVersions 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY"

217"++3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY -v"

218"mapScalacOptions ",REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s" ",-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

219"set every credentials := Nil"

220"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

221"removeScalacOptionsStartingWith -P:wartremover"

223moduleMappings

224"runBuild 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY """{"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}""" org.phenoscape%scowl org.phenoscape%scowl-owlapi5"

226[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

227[info] loading settings for project repo-build from akka.sbt, plugins.sbt...

228[info] loading project definition from /build/repo/project

229[info] loading settings for project parentProject from build.sbt...

230[info] set current project to scowl-project (in build file:/build/repo/)

231Execute setCrossScalaVersions: 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY

232OpenCB::Changing crossVersion 3.0.2 -> 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY in owlapi4/crossScalaVersions

233OpenCB::Changing crossVersion 3.0.2 -> 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY in owlapi5/crossScalaVersions

234OpenCB::Changing crossVersion 3.0.2 -> 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY in parentProject/crossScalaVersions

235[info] set current project to scowl-project (in build file:/build/repo/)

236[info] Setting Scala version to 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY on 3 projects.

237[info] Switching Scala version on:

238[info] * parentProject (2.13.8, 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY)

239[info] owlapi4 (2.13.8, 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY)

240[info] owlapi5 (2.13.8, 3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY)

241[info] Excluding projects:

242[info] Reapplying settings...

243[info] set current project to scowl-project (in build file:/build/repo/)

244Execute mapScalacOptions: ,REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

245[info] Reapplying settings...

246[info] set current project to scowl-project (in build file:/build/repo/)

247[info] Defining Global / credentials, credentials and 1 others.

248[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

249[info] Run `last` for details.

250[info] Reapplying settings...

251[info] set current project to scowl-project (in build file:/build/repo/)

252Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

253[info] Reapplying settings...

254OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

256 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:336)

257 Did you mean owlapi5 / allExcludeDependencies ?

258 , retry without global scopes

259[info] Reapplying settings...

260[info] set current project to scowl-project (in build file:/build/repo/)

261Execute removeScalacOptionsStartingWith: -P:wartremover

262[info] Reapplying settings...

263[info] set current project to scowl-project (in build file:/build/repo/)

264[success] Total time: 0 s, completed Nov 15, 2025, 1:59:45 AM

265Build config: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

266Parsed config: Success(ProjectBuildConfig(ProjectsConfig(List(),Map()),CompileOnly,List()))

267Starting build...

268Projects: Set(owlapi4, owlapi5)

269Starting build for ProjectRef(file:/build/repo/,owlapi4) (scowl)... [0/2]

270OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

271OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

272Compile scalacOptions: -unchecked, -encoding, utf8, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

273[info] compiling 24 Scala sources to /build/repo/owlapi4/target/scala-3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY/classes ...

274[info] done compiling

275[info] compiling 4 Scala sources to /build/repo/owlapi4/target/scala-3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY/test-classes ...

278[info] done compiling

279Starting build for ProjectRef(file:/build/repo/,owlapi5) (scowl-owlapi5)... [1/2]

280Compile scalacOptions: -unchecked, -encoding, utf8, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

281[info] compiling 24 Scala sources to /build/repo/owlapi5/target/scala-3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY/classes ...

282[info] done compiling

283[info] compiling 4 Scala sources to /build/repo/owlapi5/target/scala-3.8.0-RC1-bin-20251114-d221ef5-NIGHTLY/test-classes ...

286[info] done compiling

288************************

289Build summary:

290[{

291 "module": "scowl",

292 "compile": {"status": "ok", "tookMs": 11656, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

293 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

294 "test-compile": {"status": "ok", "tookMs": 5484, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

295 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

296 "publish": {"status": "skipped", "tookMs": 0},

297 "metadata": {

298 "crossScalaVersions": ["2.13.8", "3.0.2"]

299}

300},{

301 "module": "scowl-owlapi5",

302 "compile": {"status": "ok", "tookMs": 3311, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

303 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

304 "test-compile": {"status": "ok", "tookMs": 3222, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

305 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

306 "publish": {"status": "skipped", "tookMs": 0},

307 "metadata": {

308 "crossScalaVersions": ["2.13.8", "3.0.2"]

309}

310}]

311************************

312[success] Total time: 31 s, completed Nov 15, 2025, 2:00:16 AM

313[0JChecking patch project/plugins.sbt...

314Checking patch project/build.properties...

315Checking patch build.sbt...

316Applied patch project/plugins.sbt cleanly.

317Applied patch project/build.properties cleanly.

318Applied patch build.sbt cleanly.