Build Logs

1##################################

2Clonning https://github.com/phenoscape/scowl.git into /build/repo using revision v1.4.1

3##################################

4Note: switching to '1287db45015f67f4886465d03ad8caea3814701a'.

6You are in 'detached HEAD' state. You can look around, make experimental

7changes and commit them, and you can discard any commits you make in this

8state without impacting any branches by switching back to a branch.

10If you want to create a new branch to retain commits you create, you may

11do so (now or later) by using -c with the switch command. Example:

13 git switch -c <new-branch-name>

15Or undo this operation with:

17 git switch -

19Turn off this advice by setting config variable advice.detachedHead to false

21Using target Scala version for migration: 3.7.4

22Migrating project for -source:3.4 using Scala 3.7.4

23----

24Preparing build for 3.7.4

25Would try to apply common scalacOption (best-effort, sbt/mill only):

26Append: -rewrite,REQUIRE:-source:3.4-migration

27Remove: -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

28----

29Starting build for 3.7.4

30Execute tests: false

31sbt project found:

32Sbt version 1.6.2 is not supported, minimal supported version is 1.11.5

33Enforcing usage of sbt in version 1.11.5

34No prepare script found for project phenoscape/scowl

35##################################

36Scala version: 3.7.4

37Targets: org.phenoscape%scowl org.phenoscape%scowl-owlapi5

38Project projectConfig: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

39##################################

40Using extra scalacOptions: -rewrite,REQUIRE:-source:3.4-migration

41Filtering out scalacOptions: -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

42[sbt_options] declare -a sbt_options=()

43[process_args] java_version = '17'

44[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

45# Executing command line:

46java

47-Dfile.encoding=UTF-8

48-Dcommunitybuild.scala=3.7.4

49-Dcommunitybuild.project.dependencies.add=

50-Xmx7G

51-Xms4G

52-Xss8M

53-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

54-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

55-jar

56/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

57"setCrossScalaVersions 3.7.4"

58"++3.7.4 -v"

59"mapScalacOptions "-rewrite,REQUIRE:-source:3.4-migration,-Wconf:msg=can be rewritten automatically under:s" "-indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

60"set every credentials := Nil"

61"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

62"removeScalacOptionsStartingWith -P:wartremover"

64moduleMappings

65"runBuild 3.7.4 """{"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}""" org.phenoscape%scowl org.phenoscape%scowl-owlapi5"

67[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

68[info] loading settings for project repo-build from akka.sbt, plugins.sbt...

69[info] loading project definition from /build/repo/project

70[info] compiling 2 Scala sources to /build/repo/project/target/scala-2.12/sbt-1.0/classes ...

71[info] Non-compiled module 'compiler-bridge_2.12' for Scala 2.12.20. Compiling...

72[info] Compilation completed in 8.639s.

73[info] done compiling

74[info] loading settings for project parentProject from build.sbt...

75[info] set current project to scowl-project (in build file:/build/repo/)

76Execute setCrossScalaVersions: 3.7.4

77OpenCB::Changing crossVersion 3.0.2 -> 3.7.4 in owlapi4/crossScalaVersions

78OpenCB::Changing crossVersion 3.0.2 -> 3.7.4 in parentProject/crossScalaVersions

79OpenCB::Changing crossVersion 3.0.2 -> 3.7.4 in owlapi5/crossScalaVersions

80[info] set current project to scowl-project (in build file:/build/repo/)

81[info] Setting Scala version to 3.7.4 on 3 projects.

82[info] Switching Scala version on:

83[info] * parentProject (2.13.8, 3.7.4)

84[info] owlapi4 (2.13.8, 3.7.4)

85[info] owlapi5 (2.13.8, 3.7.4)

86[info] Excluding projects:

87[info] Reapplying settings...

88[info] set current project to scowl-project (in build file:/build/repo/)

89Execute mapScalacOptions: -rewrite,REQUIRE:-source:3.4-migration,-Wconf:msg=can be rewritten automatically under:s -indent,-no-indent,-new-syntax,,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

90[info] Reapplying settings...

91[info] set current project to scowl-project (in build file:/build/repo/)

92[info] Defining Global / credentials, credentials and 1 others.

93[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

94[info] Run `last` for details.

95[info] Reapplying settings...

96[info] set current project to scowl-project (in build file:/build/repo/)

97Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

98[info] Reapplying settings...

99OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

101 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:331)

102 Did you mean owlapi5 / allExcludeDependencies ?

103 , retry without global scopes

104[info] Reapplying settings...

105[info] set current project to scowl-project (in build file:/build/repo/)

106Execute removeScalacOptionsStartingWith: -P:wartremover

107[info] Reapplying settings...

108[info] set current project to scowl-project (in build file:/build/repo/)

109[success] Total time: 0 s, completed Jan 3, 2026, 12:50:12 AM

110Build config: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

111Parsed config: Success(ProjectBuildConfig(ProjectsConfig(List(),Map()),CompileOnly,List()))

112Starting build...

113Projects: Set(owlapi4, owlapi5)

114Starting build for ProjectRef(file:/build/repo/,owlapi4) (scowl)... [0/2]

115OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

116OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

117Compile scalacOptions: -unchecked, -encoding, utf8, -rewrite, -Wconf:msg=can be rewritten automatically under:s, -source:3.4-migration

118[info] compiling 24 Scala sources to /build/repo/owlapi4/target/scala-3.7.4/classes ...

119[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/ClassAxioms.scala]

120[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/IndividualAxioms.scala]

121[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/DataExpressions.scala]

122[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/SWRL.scala]

123[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/package.scala]

124[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/ofn/ObjectExpressions.scala]

125[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/example/ReadMeExamples.scala]

126[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/example/OWL2PrimerManchester.scala]

127[info] [patched file /build/repo/src/main/scala/org/phenoscape/scowl/omn/ScowlPropertyChain.scala]

128[info] done compiling

129[info] compiling 4 Scala sources to /build/repo/owlapi4/target/scala-3.7.4/test-classes ...

130[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowltest/ScowlTest.scala]

131[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowl/example/DataChecks.scala]

132[info] [patched file /build/repo/src/test/scala/org/phenoscape/scowl/example/AnatomyOntology.scala]

133[info] done compiling

134Starting build for ProjectRef(file:/build/repo/,owlapi5) (scowl-owlapi5)... [1/2]

135Compile scalacOptions: -unchecked, -encoding, utf8, -rewrite, -Wconf:msg=can be rewritten automatically under:s, -source:3.4-migration

136[info] compiling 24 Scala sources to /build/repo/owlapi5/target/scala-3.7.4/classes ...

137[info] done compiling

138[info] compiling 4 Scala sources to /build/repo/owlapi5/target/scala-3.7.4/test-classes ...

139[info] done compiling

141************************

142Build summary:

143[{

144 "module": "scowl",

145 "compile": {"status": "ok", "tookMs": 9752, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

146 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

147 "test-compile": {"status": "ok", "tookMs": 5423, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

148 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

149 "publish": {"status": "skipped", "tookMs": 0},

150 "metadata": {

151 "crossScalaVersions": ["2.13.8", "3.0.2"]

152}

153},{

154 "module": "scowl-owlapi5",

155 "compile": {"status": "ok", "tookMs": 3354, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

156 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

157 "test-compile": {"status": "ok", "tookMs": 3311, "warnings": 0, "errors": 0, "sourceVersion": "3.4-migration"},

158 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

159 "publish": {"status": "skipped", "tookMs": 0},

160 "metadata": {

161 "crossScalaVersions": ["2.13.8", "3.0.2"]

162}

163}]

164************************

165[success] Total time: 30 s, completed Jan 3, 2026, 12:50:42 AM

166[0JChecking patch project/plugins.sbt...

167Checking patch project/build.properties...

168Checking patch build.sbt...

169Applied patch project/plugins.sbt cleanly.

170Applied patch project/build.properties cleanly.

171Applied patch build.sbt cleanly.

172Commit migration rewrites

173Switched to a new branch 'opencb/migrate-source-3.4'

174[opencb/migrate-source-3.4 a1167a8] Apply Scala compiler rewrites using -source:3.4-migration using Scala 3.7.4

175 12 files changed, 130 insertions(+), 130 deletions(-)

176----

177Preparing build for 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY

178Scala binary version found: 3.8

179Implicitly using source version 3.8

180Scala binary version found: 3.8

181Implicitly using source version 3.8

182Would try to apply common scalacOption (best-effort, sbt/mill only):

183Append: ,REQUIRE:-source:3.8

184Remove: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

185----

186Starting build for 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY

187Execute tests: false

188sbt project found:

189Sbt version 1.6.2 is not supported, minimal supported version is 1.11.5

190Enforcing usage of sbt in version 1.11.5

191No prepare script found for project phenoscape/scowl

192##################################

193Scala version: 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY

194Targets: org.phenoscape%scowl org.phenoscape%scowl-owlapi5

195Project projectConfig: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

196##################################

197Using extra scalacOptions: ,REQUIRE:-source:3.8

198Filtering out scalacOptions: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

199[sbt_options] declare -a sbt_options=()

200[process_args] java_version = '17'

201[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

202# Executing command line:

203java

204-Dfile.encoding=UTF-8

205-Dcommunitybuild.scala=3.8.1-RC1-bin-20260102-32e416e-NIGHTLY

206-Dcommunitybuild.project.dependencies.add=

207-Xmx7G

208-Xms4G

209-Xss8M

210-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

211-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

212-jar

213/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

214"setCrossScalaVersions 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY"

215"++3.8.1-RC1-bin-20260102-32e416e-NIGHTLY -v"

216"mapScalacOptions ",REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s" ",-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

217"set every credentials := Nil"

218"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

219"removeScalacOptionsStartingWith -P:wartremover"

221moduleMappings

222"runBuild 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY """{"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}""" org.phenoscape%scowl org.phenoscape%scowl-owlapi5"

224[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

225[info] loading settings for project repo-build from akka.sbt, plugins.sbt...

226[info] loading project definition from /build/repo/project

227[info] loading settings for project parentProject from build.sbt...

228[info] set current project to scowl-project (in build file:/build/repo/)

229Execute setCrossScalaVersions: 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY

230OpenCB::Changing crossVersion 3.0.2 -> 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY in owlapi4/crossScalaVersions

231OpenCB::Changing crossVersion 3.0.2 -> 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY in owlapi5/crossScalaVersions

232OpenCB::Changing crossVersion 3.0.2 -> 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY in parentProject/crossScalaVersions

233[info] set current project to scowl-project (in build file:/build/repo/)

234[info] Setting Scala version to 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY on 3 projects.

235[info] Switching Scala version on:

236[info] * parentProject (2.13.8, 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY)

237[info] owlapi4 (2.13.8, 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY)

238[info] owlapi5 (2.13.8, 3.8.1-RC1-bin-20260102-32e416e-NIGHTLY)

239[info] Excluding projects:

240[info] Reapplying settings...

241[info] set current project to scowl-project (in build file:/build/repo/)

242Execute mapScalacOptions: ,REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

243[info] Reapplying settings...

244[info] set current project to scowl-project (in build file:/build/repo/)

245[info] Defining Global / credentials, credentials and 1 others.

246[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

247[info] Run `last` for details.

248[info] Reapplying settings...

249[info] set current project to scowl-project (in build file:/build/repo/)

250Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

251[info] Reapplying settings...

252OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

254 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:331)

255 Did you mean owlapi5 / allExcludeDependencies ?

256 , retry without global scopes

257[info] Reapplying settings...

258[info] set current project to scowl-project (in build file:/build/repo/)

259Execute removeScalacOptionsStartingWith: -P:wartremover

260[info] Reapplying settings...

261[info] set current project to scowl-project (in build file:/build/repo/)

262[success] Total time: 0 s, completed Jan 3, 2026, 12:50:50 AM

263Build config: {"projects":{"exclude":[],"overrides":{}},"java":{"version":"17"},"sbt":{"commands":[],"options":[]},"mill":{"options":[]},"tests":"compile-only","migrationVersions":["3.4"],"sourcePatches":[]}

264Parsed config: Success(ProjectBuildConfig(ProjectsConfig(List(),Map()),CompileOnly,List()))

265Starting build...

266Projects: Set(owlapi4, owlapi5)

267Starting build for ProjectRef(file:/build/repo/,owlapi4) (scowl)... [0/2]

268OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

269OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

270Compile scalacOptions: -unchecked, -encoding, utf8, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

271[info] compiling 24 Scala sources to /build/repo/owlapi4/target/scala-3.8.1-RC1-bin-20260102-32e416e-NIGHTLY/classes ...

272[info] done compiling

273[info] compiling 4 Scala sources to /build/repo/owlapi4/target/scala-3.8.1-RC1-bin-20260102-32e416e-NIGHTLY/test-classes ...

276[info] done compiling

277Starting build for ProjectRef(file:/build/repo/,owlapi5) (scowl-owlapi5)... [1/2]

278Compile scalacOptions: -unchecked, -encoding, utf8, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

279[info] compiling 24 Scala sources to /build/repo/owlapi5/target/scala-3.8.1-RC1-bin-20260102-32e416e-NIGHTLY/classes ...

280[info] done compiling

281[info] compiling 4 Scala sources to /build/repo/owlapi5/target/scala-3.8.1-RC1-bin-20260102-32e416e-NIGHTLY/test-classes ...

284[info] done compiling

286************************

287Build summary:

288[{

289 "module": "scowl",

290 "compile": {"status": "ok", "tookMs": 10645, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

291 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

292 "test-compile": {"status": "ok", "tookMs": 4981, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

293 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

294 "publish": {"status": "skipped", "tookMs": 0},

295 "metadata": {

296 "crossScalaVersions": ["2.13.8", "3.0.2"]

297}

298},{

299 "module": "scowl-owlapi5",

300 "compile": {"status": "ok", "tookMs": 3334, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

301 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

302 "test-compile": {"status": "ok", "tookMs": 2585, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

303 "test": {"status": "skipped", "tookMs": 0, "passed": 0, "failed": 0, "ignored": 0, "skipped": 0, "total": 0, "byFramework": []},

304 "publish": {"status": "skipped", "tookMs": 0},

305 "metadata": {

306 "crossScalaVersions": ["2.13.8", "3.0.2"]

307}

308}]

309************************

310[success] Total time: 30 s, completed Jan 3, 2026, 12:51:20 AM

311[0JChecking patch project/plugins.sbt...

312Checking patch project/build.properties...

313Checking patch build.sbt...

314Applied patch project/plugins.sbt cleanly.

315Applied patch project/build.properties cleanly.

316Applied patch build.sbt cleanly.