Build Logs

1##################################

2Clonning https://github.com/pityka/pairwisealignment.git into /build/repo using revision v2.2.7

3##################################

4Note: switching to 'f7a72306888bcbf699cfdd853f05242c254b74b9'.

6You are in 'detached HEAD' state. You can look around, make experimental

7changes and commit them, and you can discard any commits you make in this

8state without impacting any branches by switching back to a branch.

10If you want to create a new branch to retain commits you create, you may

11do so (now or later) by using -c with the switch command. Example:

13 git switch -c <new-branch-name>

15Or undo this operation with:

17 git switch -

19Turn off this advice by setting config variable advice.detachedHead to false

21----

22Preparing build for 3.8.0-RC6

23Scala binary version found: 3.8

24Implicitly using source version 3.8

25Scala binary version found: 3.8

26Implicitly using source version 3.8

27Would try to apply common scalacOption (best-effort, sbt/mill only):

28Append: ,REQUIRE:-source:3.8

29Remove: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

30----

31Starting build for 3.8.0-RC6

32Execute tests: true

33sbt project found:

34Sbt version 1.7.1 is not supported, minimal supported version is 1.11.5

35Enforcing usage of sbt in version 1.11.5

36No prepare script found for project pityka/pairwisealignment

37##################################

38Scala version: 3.8.0-RC6

39Targets: io.github.pityka%pairwisealignment

40Project projectConfig: {"tests":null}

41##################################

42Using extra scalacOptions: ,REQUIRE:-source:3.8

43Filtering out scalacOptions: ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

44[sbt_options] declare -a sbt_options=()

45[process_args] java_version = '17'

46[copyRt] java9_rt = '/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8/rt.jar'

47# Executing command line:

48java

49-Dfile.encoding=UTF-8

50-Dcommunitybuild.scala=3.8.0-RC6

51-Dcommunitybuild.project.dependencies.add=

52-Xmx7G

53-Xms4G

54-Xss8M

55-Dsbt.script=/root/.sdkman/candidates/sbt/current/bin/sbt

56-Dscala.ext.dirs=/root/.sbt/1.0/java9-rt-ext-eclipse_adoptium_17_0_8

57-jar

58/root/.sdkman/candidates/sbt/1.11.5/bin/sbt-launch.jar

59"setCrossScalaVersions 3.8.0-RC6"

60"++3.8.0-RC6 -v"

61"mapScalacOptions ",REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s" ",-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e""

62"set every credentials := Nil"

63"excludeLibraryDependency com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}"

64"removeScalacOptionsStartingWith -P:wartremover"

66moduleMappings

67"runBuild 3.8.0-RC6 """{"tests":null}""" io.github.pityka%pairwisealignment"

69[info] welcome to sbt 1.11.5 (Eclipse Adoptium Java 17.0.8)

70[info] loading settings for project repo-build from akka.sbt, metals.sbt, plugins.sbt...

71[info] loading project definition from /build/repo/project

72[info] compiling 2 Scala sources to /build/repo/project/target/scala-2.12/sbt-1.0/classes ...

73[info] Non-compiled module 'compiler-bridge_2.12' for Scala 2.12.20. Compiling...

74[info] Compilation completed in 8.726s.

75[info] done compiling

77 parallelExecution in Test := false,

78 ^

80 scalacOptions in (Compile, console) ~= (_ filterNot (_ == "-Xfatal-warnings"))

81 ^

82[info] loading settings for project root from build.sbt...

83[info] set current project to root (in build file:/build/repo/)

84Execute setCrossScalaVersions: 3.8.0-RC6

85OpenCB::Changing crossVersion 3.0.1 -> 3.8.0-RC6 in core/crossScalaVersions

86OpenCB::Changing crossVersion 3.0.1 -> 3.8.0-RC6 in coreJS/crossScalaVersions

87[info] set current project to root (in build file:/build/repo/)

88[info] Setting Scala version to 3.8.0-RC6 on 2 projects.

89[info] Switching Scala version on:

90[info] core (2.12.15, 2.13.8, 3.8.0-RC6)

91[info] coreJS (2.12.15, 2.13.8, 3.8.0-RC6)

92[info] Excluding projects:

93[info] * root (2.12.20)

94[info] Reapplying settings...

95[info] set current project to root (in build file:/build/repo/)

96Execute mapScalacOptions: ,REQUIRE:-source:3.8,-Wconf:msg=can be rewritten automatically under:s ,-deprecation,-feature,-Xfatal-warnings,-Werror,MATCH:.*-Wconf.*any:e

97[info] Reapplying settings...

98[info] set current project to root (in build file:/build/repo/)

99[info] Defining Global / credentials, core / credentials and 1 others.

100[info] The new values will be used by Global / pgpSelectPassphrase, Global / pgpSigningKey and 14 others.

101[info] Run `last` for details.

102[info] Reapplying settings...

103[info] set current project to root (in build file:/build/repo/)

104Execute excludeLibraryDependency: com.github.ghik:zerowaste_{scalaVersion} com.olegpy:better-monadic-for_3 org.polyvariant:better-tostring_{scalaVersion} org.wartremover:wartremover_{scalaVersion}

105[info] Reapplying settings...

106OpenCB::Failed to reapply settings in excludeLibraryDependency: Reference to undefined setting:

108 Global / allExcludeDependencies from Global / allExcludeDependencies (CommunityBuildPlugin.scala:331)

109 Did you mean allExcludeDependencies ?

110 , retry without global scopes

111[info] Reapplying settings...

112[info] set current project to root (in build file:/build/repo/)

113Execute removeScalacOptionsStartingWith: -P:wartremover

114[info] Reapplying settings...

115[info] set current project to root (in build file:/build/repo/)

116[success] Total time: 0 s, completed Jan 8, 2026, 2:14:51 AM

117Build config: {"tests":null}

119Starting build...

120Projects: Set(core)

121Starting build for ProjectRef(file:/build/repo/,core) (pairwisealignment)... [0/1]

122OpenCB::Exclude Scala3 specific scalacOption `REQUIRE:-source:3.8` in Scala 2.12.20 module Global

123OpenCB::Filter out '-deprecation', matches setting pattern '^-?-deprecation'

124OpenCB::Filter out '-feature', matches setting pattern '^-?-feature'

125OpenCB::Filter out '-Xfatal-warnings', matches setting pattern '^-?-Xfatal-warnings'

126Compile scalacOptions: -encoding, utf-8, -language:postfixOps, -language:existentials, -unchecked, -Wconf:msg=can be rewritten automatically under:s, -source:3.8

127[info] compiling 2 Scala sources to /build/repo/core/target/scala-3.8.0-RC6/classes ...

128[info] done compiling

129[info] compiling 2 Scala sources to /build/repo/core/target/scala-3.8.0-RC6/test-classes ...

130[info] done compiling

131pairwisealignment.PairwiseAlignmentSpec:

132 + longest common subsequence 0.035s

133 + global affine alignment 0.032s

134 + stamatakis 0.003s

135 + stamatakis2 0.003s

136 + global alignment 0.068s

137 + edit distance 0.032s

138 + localAlignment 0.006s

139 + fitting alignment 0.024s

140 + fitting affine alignment 0.046s

141 + overlapAlignment 0.086s

142Avg WFA/DP runtime ratio: 0.31428397913888495

143pairwisealignment.wfa.WFASpec:

144 + empty input 0.001s

145 + global affine alignment 0.002s

147************************

148Build summary:

149[{

150 "module": "pairwisealignment",

151 "compile": {"status": "ok", "tookMs": 7002, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

152 "doc": {"status": "skipped", "tookMs": 0, "files": 0, "totalSizeKb": 0},

153 "test-compile": {"status": "ok", "tookMs": 2313, "warnings": 0, "errors": 0, "sourceVersion": "3.8"},

154 "test": {"status": "ok", "tookMs": 22053, "passed": 12, "failed": 0, "ignored": 0, "skipped": 0, "total": 12, "byFramework": [{"framework": "munit", "stats": {"passed": 12, "failed": 0, "ignored": 0, "skipped": 0, "total": 12}}]},

155 "publish": {"status": "skipped", "tookMs": 0},

156 "metadata": {

157 "crossScalaVersions": ["2.12.15", "2.13.8", "3.0.1"]

158}

159}]

160************************

161[success] Total time: 34 s, completed Jan 8, 2026, 2:15:25 AM

162[0JChecking patch project/plugins.sbt...

163Checking patch project/build.properties...

164Checking patch build.sbt...

165Applied patch project/plugins.sbt cleanly.

166Applied patch project/build.properties cleanly.

167Applied patch build.sbt cleanly.